The rectorate comprises the following sections and subdivisions:
- Rector's Office
- Department of Legal Affairs
- Security Department
- Department of Internal Auditing
- Academic Senate Office of CTU
- Department of PR and Marketing
- Press and Protocol Unit
- Commercial Unit and Information Center
- Alumni Unit
- Bethlehem Club Unit
- The Jaroslav Fragner Gallery Unit
- Department of Development
- Department of Technology Transfer and Fundraising
- Department of Structural Funds
- Department for Education and Student Affairs
- Centre for Lifelong Education
- Department of Science and Research
- International Office
- Department for Quality
- Department of Construction and Investment
- Bursar's Office
- Department of Financial Management and Controlling
- Department of Budgeting and Finances
- Budgeting Office
- Financial Office
- Employee Office
- Department of Property Management
- Facility Management Office
- Transportation Office
- CTU Archive
- Archive Management and Research Unit
- Archive Services
- Department of Records Management
- Facility Management of Jugoslávských partyzánů Building
Organisational Scheme of Organisational Rules of CTU Rectorate